Contact Prediction Server

This page implements the contact prediction method described in:

Using inferred residue contacts to distinguish between correct and incorrect protein models.
Christopher S. Miller and David Eisenberg
Bioinformatics 2008 24(14):1575-1582 (doi:10.1093/bioinformatics/btn248)
[PubMed] [Bioinformatics OpenAccess]


September 18, 2009: It has come to my attention that a change in hardware had temporarily disabled this web server. It should be running again now. I apologize for any inconvenience. Feel free to contact me if you continue to experience troubles.

Upload your multiple sequence alignment here

(most common alignment formats are supported; gzipped files are also accepted):

Notes about multiple sequence alignments


Download the source code of the software to run locally here