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•3DCA3D Cluster Analysis
•Crystallization Notebook ServerElectronic notebook for recording crystallization experiments
•dapsDatabase of Distant Aligned Protein Structures
•Diffraction anisotropy serverCorrects anisotropic diffraction data for crystallographic refinement by:
  1. Evaluating the level of diffraction anisotropy in a data set.
  2. Defining an ellipsoidal high resolution shell beyond which the mean F/sigma drops below 2.0.
  3. Discarding poorly measured reflections falling outside this shell.
  4. Performing anisotropic scaling.
•Diffusion AccessibilityThe diffusion accessibility calculation determines regions of concavity and possible binding sites.
•DPANN: Fold recognition -> Protein FunctionSequence to structure alignments following fold recognition
•ERRAT: Structure AnalysisDetects errors in protein models
•FAD or NADP binding Rossmann fold detectorFAD or NADP binding Rossmann fold detector
•FIBERS: Diffraction Data AnaylsisA repository of amyloid diffraction patterns
•HotPatchHotPatch: Finds Functionally Significant Patches on Structures
•iFunc: Protein FunctionSearch for an inferred function for a protein
•Internal Repeat FinderDetermines the location of repeating fragments in a gene
•LATTICE: Diffraction Data AnalysisPrograms to calculate the average reciprocal unit cell from diffraction data
•MOMENT: Sequence AnalysisHydrophobic moment of a sequence
•MTBreg: databaseThe database of conditionally regulated Mycobacterium tuberculosis proteins
•PROKNOW: Protein FunctionA metaserver used to infer a protein’s function
•PROLINKS:Proteome NavigatorA collection of inference methods used to predict functional linkages between proteins
•Protein TriplesIdentifies logic relationships in binary genomic data
•RACC: Rare Codon Caculator Determines the number of rare E. coli codons in a DNA sequence.
•Rosetta: Protein FunctionFinding functionally-related proteins by analysis of domain fusions
•SAVES: MetaServer Structure AnalysisMetaserver for analyzing and validating protein structures
•SER: Surface Entropy ReductionA tool to aid identification of sites that are most suitable for mutation designed to enhance crystallizability
•TwinTest: Diffraction Data AnalysisOnline test for determining any twinning in protein crystals
•Twin detection with improved robustnessThe twin statistic calculated here is based on local intensity differences making it less sensitive to phenomena that tend to confound traditional intensity statistics, such as anisotropic diffraction and pseudo-centering.
•Verify_3D: Structure AnalysisA service for detecting errors in protein models
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