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3DCA3D Cluster Analysis
dapsDatabase of Distant Aligned Protein Structures
Diffraction anisotropy serverCorrects anisotropic diffraction data for crystallographic refinement by:
  1. Evaluating the level of diffraction anisotropy in a data set.
  2. Defining an ellipsoidal high resolution shell beyond which the mean F/sigma drops below 2.0.
  3. Discarding poorly measured reflections falling outside this shell.
  4. Performing anisotropic scaling.
Diffusion AccessibilityThe diffusion accessibility calculation determines regions of concavity and possible binding sites.
DPANN: Fold recognition -> Protein FunctionSequence to structure alignments following fold recognition
ERRAT: Structure AnalysisDetects errors in protein models
FAD or NADP binding Rossmann fold detectorFAD or NADP binding Rossmann fold detector
FIBERS: Diffraction Data AnaylsisA repository of amyloid diffraction patterns
HotPatchHotPatch: Finds Functionally Significant Patches on Structures
iFunc: Protein FunctionSearch for an inferred function for a protein
Internal Repeat FinderDetermines the location of repeating fragments in a gene
LATTICE: Diffraction Data AnalysisPrograms to calculate the average reciprocal unit cell from diffraction data
MOMENT: Sequence AnalysisHydrophobic moment of a sequence
MTBreg: databaseThe database of conditionally regulated Mycobacterium tuberculosis proteins
PROKNOW: Protein FunctionA metaserver used to infer a protein’s function
PROLINKS:Proteome NavigatorA collecution of inference methods used to predict functional linkages between proteins
Protein TriplesIdentifies logic relationships in binary genomic data
RACC: Rare Codon Caculator Determines the number of rare E. coli codons in a DNA sequence.
Rosetta: Protein FunctionFinding functionally-related proteins by analysis of domain fusions
SAVES v2: MetaServer Structure AnalysisMetaserver for analyzing and validating protein structures
SAVES v4: updated MetaServer Structure AnalysisMetaserver for analyzing and validating protein structures
SER: Surface Entropy ReductionA tool to aid identification of sites that are most suitable for mutation designed to enhance crystallizability
TwinTest: Diffraction Data AnalysisOnline test for determining any twinning in protein crystals
Twin detection with improved robustnessThe twin statistic calculated here is based on local intensity differences making it less sensitive to phenomena that tend to confound traditional intensity statistics, such as anisotropic diffraction and pseudo-centering.
Verify_3D: Structure AnalysisA service for detecting errors in protein models
XdVal: Structure AnalysisDisplays out put from running phenix.xtriage
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